metasnf-package	metasnf-package
abcd_anxiety	abcd_anxiety
abcd_colour	abcd_colour
abcd_cort_sa	abcd_cort_sa
abcd_cort_t	abcd_cort_t
abcd_depress	abcd_depress
abcd_h_income	abcd_h_income
abcd_income	abcd_income
abcd_pubertal	abcd_pubertal
abcd_subc_v	abcd_subc_v
add_columns	add_columns
add_settings_df_rows	add_settings_df_rows
adjusted_rand_index_heatmap	adjusted_rand_index_heatmap
age_df	age_df
alluvial_cluster_plot	alluvial_cluster_plot
anxiety	anxiety
arrange_dll	arrange_dll
as.data.frame.data_list	as.data.frame.data_list
as.data.frame.ext_solutions_df	as.data.frame.ext_solutions_df
as.data.frame.settings_df	as.data.frame.settings_df
as.data.frame.snf_config	as.data.frame.snf_config
as.data.frame.solutions_df	as.data.frame.solutions_df
as.data.frame.t_ext_solutions_df	as.data.frame.t_ext_solutions_df
as.data.frame.t_solutions_df	as.data.frame.t_solutions_df
as.data.frame.weights_matrix	as.data.frame.weights_matrix
as.list.clust_fns_list	as.list.clust_fns_list
as.list.data_list	as.list.data_list
as.list.dist_fns_list	as.list.dist_fns_list
as.list.sim_mats_list	as.list.sim_mats_list
as.list.snf_config	as.list.snf_config
as.matrix.ari_matrix	as.matrix.ari_matrix
as.matrix.weights_matrix	as.matrix.weights_matrix
assemble_data	assemble_data
assoc_pval_heatmap	assoc_pval_heatmap
as_ari_matrix	as_ari_matrix
as_data_list	as_data_list
as_settings_df	as_settings_df
as_sim_mats_list	as_sim_mats_list
as_snf_config	as_snf_config
as_weights_matrix	as_weights_matrix
auto_plot	auto_plot
bar_plot	bar_plot
batch_row_closure	batch_row_closure
batch_snf	batch_snf
batch_snf_subsamples	batch_snf_subsamples
cache_a_complete_example_ext_sol_df	cache_a_complete_example_ext_sol_df
cache_a_complete_example_lp_ext_sol_df	cache_a_complete_example_lp_ext_sol_df
cache_a_complete_example_sol_df	cache_a_complete_example_sol_df
calculate_coclustering	calculate_coclustering
calculate_db_indices	quality_measures
calculate_dunn_indices	quality_measures
calculate_silhouettes	quality_measures
calc_aris	calc_aris
calc_assoc_pval	calc_assoc_pval
calc_assoc_pval_matrix	calc_assoc_pval_matrix
calc_nmis	calc_nmis
cancer_diagnosis_df	cancer_diagnosis_df
cat_colours	cat_colours
cell_significance_fn	cell_significance_fn
char_to_fac	char_to_fac
check_cfll_fns	check_cfll_fns
check_cfll_fn_args	check_cfll_fn_args
check_cfll_named	check_cfll_named
check_cfll_unique_names	check_cfll_unique_names
check_compatible_sdf_cfl	check_compatible_sdf_cfl
check_compatible_sdf_dfl	check_compatible_sdf_dfl
check_compatible_sdf_wm	check_compatible_sdf_wm
check_dataless_annotations	check_dataless_annotations
check_dfll_fn_args	check_dfll_fn_args
check_dfll_fn_names	check_dfll_fn_names
check_dfll_item_names	check_dfll_item_names
check_dfll_subitems_are_fns	check_dfll_subitems_are_fns
check_dfll_unique_names	check_dfll_unique_names
check_dll_duplicate_components	check_dll_duplicate_components
check_dll_duplicate_features	check_dll_duplicate_features
check_dll_empty_input	check_dll_empty_input
check_dll_four_subitems	check_dll_four_subitems
check_dll_inherits_list	check_dll_inherits_list
check_dll_subitem_classes	check_dll_subitem_classes
check_dll_subitem_names	check_dll_subitem_names
check_dll_types	check_dll_types
check_dll_uid	check_dll_uid
check_hm_dependencies	check_hm_dependencies
check_sdfl_colnames	check_sdfl_colnames
check_sdfl_is_df	check_sdfl_is_df
check_sdfl_numeric	check_sdfl_numeric
check_similarity_matrices	check_similarity_matrices
check_valid_k	check_valid_k
check_valid_sc	check_valid_sc
chi_squared_pval	chi_squared_pval
clust_fns	clust_fns
clust_fns_list	clust_fns_list
coclustering_coverage_check	coclustering_coverage_check
cocluster_density	cocluster_density
cocluster_heatmap	cocluster_heatmap
collapse_dl	collapse_dl
colour_scale	colour_scale
config_heatmap	plot.snf_config
convert_uids	convert_uids
cort_sa	cort_sa
cort_t	cort_t
data_list	data_list
db_manual	db_manual
depress	depress
diagnosis_df	diagnosis_df
discretisation	discretisation
discretisation_evec_data	discretisation_evec_data
dist_fns	dist_fns
dist_fns_list	dist_fns_list
dlapply	dlapply
dll_uid_first_col	dll_uid_first_col
dl_variable_summary	dl_variable_summary
domains	domains
domain_merge	snf_scheme
dplyr_row_slice.ext_solutions_df	dplyr_row_slice.ext_solutions_df
dplyr_row_slice.solutions_df	dplyr_row_slice.solutions_df
drop_cols	drop_cols
drop_inputs	drop_inputs
dunn_manual	dunn_manual
ensure_dll_df	ensure_dll_df
esm_manhattan_plot	esm_manhattan_plot
estimate_nclust_given_graph	estimate_nclust_given_graph
euclidean_distance	dist_fns
expression_df	expression_df
extend_solutions	extend_solutions
ext_solutions_df	ext_solutions_df
fav_colour	fav_colour
features	features
fisher_exact_pval	fisher_exact_pval
gender_df	gender_df
generate_annotations_list	generate_annotations_list
generate_clust_algs_list	generate_clust_algs_list
generate_distance_metrics_list	generate_distance_metrics_list
generate_settings_matrix	generate_settings_matrix
get_clusters	get_clusters
get_cluster_df	get_cluster_df
get_cluster_solutions	get_cluster_solutions
get_complete_uids	get_complete_uids
get_dist_matrix	get_dist_matrix
get_dl_uids	get_dl_uids
get_heatmap_order	get_heatmap_order
get_matrix_order	get_matrix_order
get_mean_pval	get_mean_pval
get_min_pval	get_min_pval
get_pvals	get_pvals
get_representative_solutions	get_representative_solutions
gexclude	gexclude
gower_distance	dist_fns
gselect	gselect
hamming_distance	dist_fns
income	income
individual	snf_scheme
is_data_list	is_data_list
jitter_plot	jitter_plot
label_meta_clusters	label_meta_clusters
label_prop	label_prop
label_propagate	label_propagate
label_splits	label_splits
linear_adjust	linear_adjust
linear_model_pval	linear_model_pval
mc_manhattan_plot	mc_manhattan_plot
merge.clust_fns_list	merge.clust_fns_list
merge.data_list	merge.data_list
merge.dist_fns_list	merge.dist_fns_list
merge.ext_solutions_df	merge.ext_solutions_df
merge.settings_df	merge.settings_df
merge.sim_mats_list	merge.sim_mats_list
merge.snf_config	merge.snf_config
merge.solutions_df	merge.solutions_df
merge.t_ext_solutions_df	merge.t_ext_solutions_df
merge.t_solutions_df	merge.t_solutions_df
merge.weights_matrix	merge.weights_matrix
merge_df_list	merge_df_list
metasnf	metasnf-package
metasnf_alert	metasnf_alert
metasnf_defunct	metasnf_defunct
metasnf_deprecated	metasnf_deprecated
metasnf_error	metasnf_error
metasnf_warning	metasnf_warning
meta_cluster_heatmap	plot.ari_matrix
methylation_df	methylation_df
mock_ari_matrix	mock_ari_matrix
mock_clust_fns_list	mock_clust_fns_list
mock_data_list	mock_data_list
mock_dist_fns_list	mock_dist_fns_list
mock_ext_solutions_df	mock_ext_solutions_df
mock_mc_solutions_df	mock_mc_solutions_df
mock_rep_solutions_df	mock_rep_solutions_df
mock_settings_df	mock_settings_df
mock_snf_config	mock_snf_config
mock_solutions_df	mock_solutions_df
mock_t_solutions_df	mock_t_solutions_df
mock_weights_matrix	mock_weights_matrix
new_ari_matrix	new_ari_matrix
new_clust_fns_list	new_clust_fns_list
new_data_list	new_data_list
new_dist_fns_list	new_dist_fns_list
new_ext_solutions_df	new_ext_solutions_df
new_settings_df	new_settings_df
new_sim_mats_list	new_sim_mats_list
new_snf_config	new_snf_config
new_solutions_df	new_solutions_df
new_weights_matrix	new_weights_matrix
not_shown_message	not_shown_message
numcol_to_numeric	numcol_to_numeric
n_features	n_features
n_observations	n_observations
ord_reg_pval	ord_reg_pval
parallel_batch_snf	parallel_batch_snf
pick_cols	pick_cols
pl	pl
plot.ari_matrix	plot.ari_matrix
plot.data_list	plot.data_list
plot.ext_solutions_df	plot.ext_solutions_df
plot.settings_df	plot.snf_config
plot.snf_config	plot.snf_config
plot.solutions_df	plot.solutions_df
plot.t_ext_solutions_df	plot.ext_solutions_df
plot.t_solutions_df	plot.solutions_df
plot.weights_matrix	plot.snf_config
prefix_dll_uid	prefix_dll_uid
print.ari_matrix	print.ari_matrix
print.clust_fns_list	print.clust_fns_list
print.data_list	print.data_list
print.dist_fns_list	print.dist_fns_list
print.ext_solutions_df	print.ext_solutions_df
print.settings_df	print.settings_df
print.sim_mats_list	print.sim_mats_list
print.snf_config	print.snf_config
print.solutions_df	print.solutions_df
print.t_ext_solutions_df	print.t_ext_solutions_df
print.t_solutions_df	print.t_solutions_df
print.weights_matrix	print.weights_matrix
print_with_n_message	print_with_n_message
print_with_t_message	print_with_t_message
pubertal	pubertal
pval_heatmap	pval_heatmap
quality_measures	quality_measures
random_removal	random_removal
rbind.ext_solutions_df	rbind.ext_solutions_df
rbind.solutions_df	rbind.solutions_df
rbind.t_solutions_df	rbind.t_solutions_df
rbind.weights_matrix	rbind.weights_matrix
remove_dll_incomplete	remove_dll_incomplete
rename_dl	rename_dl
reorder_dl_uids	reorder_dl_uids
resample	resample
run_snf	run_snf
save_heatmap	save_heatmap
scale_diagonals	scale_diagonals
settings_df	settings_df
sew_euclidean_distance	dist_fns
shiny_annotator	shiny_annotator
similarity_matrix_heatmap	similarity_matrix_heatmap
similarity_matrix_path	similarity_matrix_path
sim_mats_list	sim_mats_list
sim_to_dist	sim_to_dist
siw_euclidean_distance	siw_euclidean_distance
snf_config	snf_config
snf_scheme	snf_scheme
snf_step	snf_step
sn_euclidean_distance	dist_fns
solutions_df	solutions_df
sol_df_col_order	sol_df_col_order
spectral_eigen	clust_fns
spectral_eigen_classic	clust_fns
spectral_eight	clust_fns
spectral_five	clust_fns
spectral_four	clust_fns
spectral_nine	clust_fns
spectral_rot	clust_fns
spectral_rot_classic	clust_fns
spectral_seven	clust_fns
spectral_six	clust_fns
spectral_ten	clust_fns
spectral_three	clust_fns
spectral_two	clust_fns
split_parser	split_parser
str.ari_matrix	str.ari_matrix
str.clust_fns_list	str.clust_fns_list
str.data_list	str.data_list
str.dist_fns_list	str.dist_fns_list
str.ext_solutions_df	str.ext_solutions_df
str.settings_df	str.settings_df
str.sim_mats_list	str.sim_mats_list
str.snf_config	str.snf_config
str.solutions_df	str.solutions_df
str.t_ext_solutions_df	str.t_ext_solutions_df
str.t_solutions_df	str.t_solutions_df
str.weights_matrix	str.weights_matrix
subc_v	subc_v
subsample_dl	subsample_dl
subsample_pairwise_aris	subsample_pairwise_aris
summarize_clust_fns_list	summarize_clust_fns_list
summarize_dfl	summarize_dfl
summarize_dl	summarize_dl
summarize_pvals	summarize_pvals
summary.ari_matrix	summary.ari_matrix
summary.clust_fns_list	summary.clust_fns_list
summary.data_list	summary.data_list
summary.dist_fns_list	summary.dist_fns_list
summary.ext_solutions_df	summary.ext_solutions_df
summary.settings_df	summary.settings_df
summary.sim_mats_list	summary.sim_mats_list
summary.snf_config	summary.snf_config
summary.solutions_df	summary.solutions_df
summary.t_ext_solutions_df	summary.t_ext_solutions_df
summary.t_solutions_df	summary.t_solutions_df
summary.weights_matrix	summary.weights_matrix
summary_features	summary_features
train_test_assign	train_test_assign
two_step_merge	snf_scheme
uids	uids
validate_ari_matrix	validate_ari_matrix
validate_clust_fns_list	validate_clust_fns_list
validate_data_list	validate_data_list
validate_dist_fns_list	validate_dist_fns_list
validate_ext_solutions_df	validate_ext_solutions_df
validate_settings_df	validate_settings_df
validate_sim_mats_list	validate_sim_mats_list
validate_snf_config	validate_snf_config
validate_solutions_df	validate_solutions_df
validate_weights_matrix	validate_weights_matrix
var_manhattan_plot	var_manhattan_plot
weights_matrix	weights_matrix
