R: Conditionally Symmetric Multidimensional Gaussian Mixture Model

# Conditionally Symmetric Multidimensional Gaussian Mixture Model

## Documentation for package ‘csmGmm’ version 0.5.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

calc_dens_cor | calc_dens_cor.R
calc_dens_ind_2d | calc_dens_ind.R
calc_dens_ind_3d | Calculate J trivariate normal densities (all dimensions are independent) under fitted csmGmm.
calc_dens_ind_multiple | Calculate the density of K-dimensional multivariate normal (all dimensions are independent) under fitted acsGmm.
check_incongruous | check_incongruous.R
create_plots | create_plots.R
find_2d | Tells if row x if allTestStats is an incongruous result (has a higher lfdr than a set of test statistics with lower magnitudes). For K=2 case.
find_3d | Tells if row x if allTestStats is an incongruous result (has a higher lfdr than a set of test statistics with lower magnitudes). For K=3 case.
find_4d | Tells if row x if allTestStats is an incongruous result (has a higher lfdr than a set of test statistics with lower magnitudes). For K=4 case.
find_max_means | find_max_means.R
generate_init_lists | generate_init_lists.R
prepare_csmgmm_data | prepare_csmgmm_data.R
process_lfdr_results | process_lfdr_results.R
read_gwas_one | read_gwas.R
read_gwas_set | Read 2-5 GWAS Catalog summary-statistics files into the current environment.
symm_fit_cor_EM | symm_fit_cor.R
symm_fit_cor_EM_fulllik | symm_fit_cor_fulllik.R
symm_fit_cor_EM_noAssumption | symm_fit_cor_noAssumption.R
symm_fit_cor_EM_rho | symm_fit_cor_rho.R
symm_fit_ind_EM | symm_fit_ind.R
symm_fit_ind_EM_noAssumption | symm_fit_ind_noAssumption.R