R: Fitting Predictive Microbiology Models

# Fitting Predictive Microbiology Models

## Documentation for package ‘predmicror’ version 1.3.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

accuracy_factor | Bias and accuracy factors
AIC.predmicror_fit | Methods for 'predmicror_fit' objects
AIC.predmicror_omnibus_fit | Methods for omnibus fits
as.data.frame.predmicror_fit | Extract fitted values and residuals from a predmicror fit
aw | Data of aw
BaranyiFM | Baranyi and Roberts full growth model
BaranyiRM | Baranyi and Roberts reduced growth model
bias_factor | Bias and accuracy factors
BIC.predmicror_fit | Methods for 'predmicror_fit' objects
BIC.predmicror_omnibus_fit | Methods for omnibus fits
bixina | Data concerning _Staphylococcus aureus_ microbial inactivation in beef
BuchananRM | Buchanan reduced growth model
CMAW | Cardinal model for water activity
CMInh | Cardinal model for growth inhibitors
CMPH | Cardinal model for pH
CMTI | Cardinal model for temperature
coef.predmicror_fit | Methods for 'predmicror_fit' objects
coef.predmicror_omnibus_fit | Methods for omnibus fits
compare_models | Compare fitted predmicror models
dynamic_profile | Create a dynamic environmental profile
dynamic_sensitivity | Finite-difference sensitivity for dynamic predictions
FangNLM | Fang no lag growth model
fitted.predmicror_fit | Methods for 'predmicror_fit' objects
fitted.predmicror_omnibus_fit | Methods for omnibus fits
fit_cardinal | Fit a cardinal parameter model
fit_dynamic_growth | Fit dynamic microbial growth models
fit_dynamic_inactivation | Fit dynamic microbial inactivation models
fit_growth | Fit a primary growth model
fit_inactivation | Fit a microbial inactivation model
fit_metrics | Calculate model diagnostics for a fitted predmicror model
fit_metrics.default | Calculate model diagnostics for a fitted predmicror model
fit_metrics.predmicror_fit | Calculate model diagnostics for a fitted predmicror model
fit_omnibus | Fit omnibus predictive microbiology models
fit_omnibus_growth | Fit omnibus predictive microbiology models
fit_omnibus_inactivation | Fit omnibus predictive microbiology models
GeeraerdST | Geeraerd inactivation model
growthfull | Data of a complete curve of microbial growth
growthnolag | Data of a no lag curve of microbial growth
growthred | Data of a reduced curve of microbial growth
HuangFM | Huang full growth model
HuangNLM | Huang no lag growth model
HuangRGS | Huang reparameterized Gompertz survival model
HuangRM | Huang reduced growth model
inh | Data of INH antimicrobials
logLik.predmicror_fit | Methods for 'predmicror_fit' objects
logLik.predmicror_omnibus_fit | Methods for omnibus fits
mafart2005Li11 | Data of microbial inactivation Albert and Mafart (2005)
omnibus_secondary | Define an omnibus secondary model
ph | Data pH
plot.predmicror_fit | Methods for 'predmicror_fit' objects
predict.predmicror_fit | Methods for 'predmicror_fit' objects
predict.predmicror_omnibus_fit | Methods for omnibus fits
predict_dynamic_growth | Predict microbial growth under dynamic environmental conditions
predict_dynamic_inactivation | Predict microbial inactivation under dynamic environmental conditions
predmicror_assistant | Assistant for predmicror
predmicror_assistant_app | Launch the predmicror assistant Shiny app
predmicror_augment | Extract fitted values and residuals from a predmicror fit
predmicror_augment.default | Extract fitted values and residuals from a predmicror fit
predmicror_augment.predmicror_fit | Extract fitted values and residuals from a predmicror fit
predmicror_fit_methods | Methods for 'predmicror_fit' objects
predmicror_models | List models available through the fitting wrappers
predmicror_omnibus_methods | Methods for omnibus fits
print.predmicror_fit | Methods for 'predmicror_fit' objects
print.predmicror_omnibus_fit | Methods for omnibus fits
residuals.predmicror_fit | Methods for 'predmicror_fit' objects
residuals.predmicror_omnibus_fit | Methods for omnibus fits
RichardsNLM | Richards no lag growth model
RossoFM | Rosso full growth model
salmonella | Potential growth of _Salmonella typhimurium_ on cooked chicken
summary.predmicror_fit | Methods for 'predmicror_fit' objects
summary.predmicror_omnibus_fit | Methods for omnibus fits
validate_omnibus_leave_one_out | Validate an omnibus fit by leaving out one group
vcov.predmicror_fit | Methods for 'predmicror_fit' objects
WeibullM | Weibull inactivation model Mafart
WeibullMM | Weibull inactivation modified model Mafart
WeibullPH | Weibull inactivation model Peleg and Huang
ZwieteringFM | Zwietering full growth model