gl.LDNe                 Estimates effective population size using the
                        Linkage Disequilibrium method based on
                        NeEstimator (V2)
gl.blast                Aligns nucleotides sequences against those
                        present in a target database using blastn
gl.collapse             Collapses a distance matrix by amalgamating
                        populations with pairwise fixed difference
                        count less that a threshold
gl.evanno               Creates an Evanno plot from a STRUCTURE run
                        object
gl.ld.distance          Plots linkage disequilibrium against distance
                        by population disequilibrium patterns
gl.ld.haplotype         Visualize patterns of linkage disequilibrium
                        and identification of haplotypes
gl.map.structure        Maps a STRUCTURE plot using a genlight object
gl.nhybrids             Creates an input file for the program
                        NewHybrids and runs it if NewHybrids is
                        installed
gl.outflank             Identifies loci under selection per population
                        using the outflank method of Whitlock and
                        Lotterhos (2015)
gl.plot.faststructure   Plots fastStructure analysis results (Q-matrix)
gl.plot.structure       Plots STRUCTURE analysis results (Q-matrix)
gl.run.epos             Run EPOS for Inference of Historical
                        Population-Size Changes
gl.run.faststructure    Runs a faststructure analysis using a genlight
                        object
gl.run.stairway2        Run Stairway Plot 2 for Demographic History
                        Inference
gl.run.structure        Runs a STRUCTURE analysis using a genlight
                        object
gl.sfs                  Creates a site frequency spectrum based on a
                        dartR or genlight object
utils.outflank          OutFLANK: An Fst outlier approach by Mike
                        Whitlock and Katie Lotterhos, University of
                        British Columbia.
utils.outflank.MakeDiploidFSTMat
                        Creates OutFLANK input file from individual
                        genotype info.
utils.outflank.plotter
                        Plotting functions for Fst distributions after
                        OutFLANK
utils.structure.evanno
                        Util function for evanno plots
utils.structure.genind2gtypes
                        structure util functions
utils.structure.run     Utility function to run Structure
