R: Phylogenetic Analysis with Dependent Discrete Models

# Phylogenetic Analysis with Dependent Discrete Models

## Documentation for package ‘rphylo’ version 0.1.1

- DESCRIPTION file
- Package README

## Help Pages

get_emp_freq | Derive empirical frequencies of states
print.dep_model | Print method for dep_model objects
run_dep_model | Run a dependent discrete-character model
scale_trees | Scale branch lengths of phylogenetic trees
tdata | Example trait dataset
tdata2 | Example trait dataset (60 taxa)
ttree | Example phylogenetic tree
ttree2 | Example phylogenetic trees (500 trees)