Package: rphylo
Type: Package
Title: Phylogenetic Analysis with Dependent Discrete Models
Version: 0.1.1
Authors@R: c(
  person(given="Vivian G.",family="Li", 
         role = c("aut", "cre"),
         email="liguo.vivian@gmail.com"),
  person( given="Andrew",family="Meade",
         role = "ctb",
         comment = "Original 'BayesTraits' implementation"),
  person( given="Mark",family="Pagel",
         role = "ctb",
         comment = "Original 'BayesTraits' implementation")
  )
Description: Implementation of dependent discrete models (with reversible jump MCMC) derived from 'BayesTraits' V5.0.3 <https://github.com/AndrewPMeade/BayesTraits-Release/tree/Release>. Original software copyright Andrew Meade and contributors, distributed under GPL-3. Modifications for this package by Vivian G. Li <liguo.vivian@gmail.com>. The following articles should be referenced when using this package: Pagel, M., A. Meade and D. Barker (2004) "Bayesian estimation of ancestral character states on phylogenies" <doi:10.1080/10635150490522232>; Pagel, M. (1994) "Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters" <doi:10.1098/rspb.1994.0006>; Pagel, M. and A. Meade (2006) "Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo" <doi:10.1086/503444>.
License: GPL-3
Encoding: UTF-8
Imports: ape, phangorn, expm, stats
LazyData: true
Config/roxygen2/version: 8.0.0
Depends: R (>= 3.5)
NeedsCompilation: no
Packaged: 2026-06-18 03:16:46 UTC; v
Author: Vivian G. Li [aut, cre],
  Andrew Meade [ctb] (Original 'BayesTraits' implementation),
  Mark Pagel [ctb] (Original 'BayesTraits' implementation)
Maintainer: Vivian G. Li <liguo.vivian@gmail.com>
Repository: CRAN
Date/Publication: 2026-06-23 13:30:02 UTC
Built: R 4.6.0; ; 2026-06-23 16:00:55 UTC; unix
