| SubpathwayGMir-package | The SubpathwayGMir package |
| getBackground | Get the background of molecules |
| getInteGraphList | Get the reconstructed metabolic pathway graphs |
| GetK2riData | Get the environment data |
| getLocSubGraph | Get the located metabolic subpathways |
| identifyGraph | Annotate and identify subpathways |
| initializeK2ri | Initialize environment variable k2ri |
| plotGraph | Visualize a pathway graph |
| printGraph | Print the results of graph annotation and identification |
| SubpathwayGMir | The SubpathwayGMir package |
| updateOrgEnvir | Update the organism-specific environment variables |