| cgdsr-package | CGDS-R : a library for accessing data in the MSKCC Cancer Genomics Data Server (CGDS). |
| CGDS | Construct a CGDS connection object |
| cgdsr | CGDS-R : a library for accessing data in the MSKCC Cancer Genomics Data Server (CGDS). |
| cgdsr-CGDS | Construct a CGDS connection object |
| cgdsr-getCancerStudies | Get available cancer studies available in CGDS |
| cgdsr-getCaseLists | Get available case lists for a specific cancer study |
| cgdsr-getClinicalData | Get clinical data for cancer study |
| cgdsr-getGeneticProfiles | Get available genetic data profiles for a specific cancer study |
| cgdsr-getMutationData | Get mutation data for cancer study |
| cgdsr-getProfileData | Retrieves genomic profile data for genes and genetic profiles. |
| cgdsr-plot | Generic plot function for CGDS API data. |
| cgdsr-processURL | Internal methods for CGDS library. |
| cgdsr-setPlotErrorMsg | Set custom plot error message |
| cgdsr-setVerbose | Set verbose logging level for CGDS function calls |
| cgdsr-test | Simple test suite for CGDS object. |
| getCancerStudies | Get available cancer studies available in CGDS |
| getCancerStudies.CGDS | Get available cancer studies available in CGDS |
| getCaseLists | Get available case lists for a specific cancer study |
| getCaseLists.CGDS | Get available case lists for a specific cancer study |
| getClinicalData | Get clinical data for cancer study |
| getClinicalData.CGDS | Get clinical data for cancer study |
| getGeneticProfiles | Get available genetic data profiles for a specific cancer study |
| getGeneticProfiles.CGDS | Get available genetic data profiles for a specific cancer study |
| getMutationData | Get mutation data for cancer study |
| getMutationData.CGDS | Get mutation data for cancer study |
| getProfileData | Retrieves genomic profile data for genes and genetic profiles. |
| getProfileData.CGDS | Retrieves genomic profile data for genes and genetic profiles. |
| plot | Generic plot function for CGDS API data. |
| plot.CGDS | Generic plot function for CGDS API data. |
| processURL | Internal methods for CGDS library. |
| processURL.CGDS | Internal methods for CGDS library. |
| setPlotErrorMsg | Set custom plot error message |
| setPlotErrorMsg.CGDS | Set custom plot error message |
| setVerbose | Set verbose logging level for CGDS function calls |
| setVerbose.CGDS | Set verbose logging level for CGDS function calls |
| test | Simple test suite for CGDS object. |
| test.CGDS | Simple test suite for CGDS object. |