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| addSubNode | Misc. functions from phyext package |
| as | Misc. functions from phyext package (class definitions) |
| as-method | Misc. functions from phyext package (class definitions) |
| coerce-method | Misc. functions from phyext package (class definitions) |
| coerce-methods | Misc. functions from phyext package (class definitions) |
| collapse.singletons | Misc. functions from phyext package |
| collapse.subnodes | Misc. functions from phyext package |
| collapse.to.singles | Misc. functions from phyext package |
| contData | Misc. functions from phyext package |
| deep.phy.copy | Misc. functions from phyext package |
| discData | Misc. functions from phyext package |
| expand.singles | Misc. functions from phyext package |
| get.nexus.comments | Misc. functions from phyext package |
| get.nodenames | Misc. functions from phyext package |
| get.tree.weights | Misc. functions from phyext package |
| getEmptyDataFrame | Misc. functions from phyext package |
| getSubNodeData | Misc. functions from phyext package |
| getSubNodeEdgeInds | Misc. functions from phyext package |
| getSubNodePosish | Misc. functions from phyext package |
| guess.datatype | Misc. functions from phyext package |
| has.block | Misc. functions from phyext package |
| has.characters2 | Misc. functions from phyext package |
| has.weights | Misc. functions from phyext package |
| hasData | Misc. functions from phyext package (methods definitions) |
| hasData-method | Misc. functions from phyext package (methods definitions) |
| hasData-methods | Misc. functions from phyext package (methods definitions) |
| hasDataColumn | Misc. functions from phyext package (methods definitions) |
| hasDataColumn-method | Misc. functions from phyext package (methods definitions) |
| hasDataColumn-methods | Misc. functions from phyext package (methods definitions) |
| hasSubNodes | Misc. functions from phyext package (methods definitions) |
| hasSubNodes-method | Misc. functions from phyext package (methods definitions) |
| hasSubNodes-methods | Misc. functions from phyext package (methods definitions) |
| hasWeight | Misc. functions from phyext package (class definitions) |
| hasWeight-method | Misc. functions from phyext package (class definitions) |
| is.simmap | Misc. functions from phyext package |
| match.order | Misc. functions from phyext package |
| newlabels.v15 | Misc. functions from phyext package |
| newlabels.v1x | Misc. functions from phyext package |
| noneData | Misc. functions from phyext package |
| nSubNodes | Misc. functions from phyext package |
| phyext | Misc. functions from phyext package (methods definitions) |
| phyext-method | Misc. functions from phyext package (methods definitions) |
| phyext-methods | Misc. functions from phyext package (methods definitions) |
| phyextPlot | Misc. functions from phyext package |
| phylo4d_ext-class | Misc. functions from phyext package (class definitions) |
| plot-method | Misc. functions from phyext package (class definitions) |
| read.characters2 | Misc. functions from phyext package |
| read.nexus.block | Misc. functions from phyext package |
| read.nexus.simmap | Misc. functions from phyext package |
| read.simmap | Misc. functions from phyext package |
| read.simmap.new | Misc. functions from phyext package |
| rmdata | Misc. functions from phyext package (methods definitions) |
| rmdata-method | Misc. functions from phyext package (methods definitions) |
| rmdata-methods | Misc. functions from phyext package (methods definitions) |
| show-method | Misc. functions from phyext package (class definitions) |
| showSubNodes | Misc. functions from phyext package |
| snbranch | Misc. functions from phyext package (class definitions) |
| snbranch-method | Misc. functions from phyext package (class definitions) |
| sndata | Misc. functions from phyext package (class definitions) |
| sndata-method | Misc. functions from phyext package (class definitions) |
| sndata<- | Misc. functions from phyext package (class definitions) |
| sndata<--method | Misc. functions from phyext package (class definitions) |
| snid | Misc. functions from phyext package (class definitions) |
| snid-method | Misc. functions from phyext package (class definitions) |
| snposition | Misc. functions from phyext package (class definitions) |
| snposition-method | Misc. functions from phyext package (class definitions) |
| strip | Misc. functions from phyext package |
| tipdate.ci | Misc. functions from phyext package |
| treeHeight | Misc. functions from phyext package (methods definitions) |
| treeHeight-method | Misc. functions from phyext package (methods definitions) |
| treeHeight-methods | Misc. functions from phyext package (methods definitions) |
| validPhylo4d_ext | Misc. functions from phyext package |
| weight | Misc. functions from phyext package (class definitions) |
| weight-method | Misc. functions from phyext package (class definitions) |
| weight<- | Misc. functions from phyext package (class definitions) |
| weight<--method | Misc. functions from phyext package (class definitions) |
| write.characters2 | Misc. functions from phyext package |
| write.nexus.simmap | Misc. functions from phyext package |
| write.simmap | Misc. functions from phyext package |
| write.simmap.new | Misc. functions from phyext package |
| write.simmap.old | Misc. functions from phyext package |