| AddParSettingProFAST | Add ProFAST model settings for a PRECASTObj object |
| get_r2_mcfadden | Calcuate the the adjusted McFadden's pseudo R-square |
| IntegrateSRTData | Integrate multiple SRT data into a Seurat object |
| iscmeb_run | Fit an iSC-MEB model using specified multi-section embeddings |
| model_set_ProFAST | Set parameters for ProFAST model |
| ProFAST | Run ProFAST model for a PRECASTObj object |
| ProFAST_run | (Varitional) ICM-EM algorithm for implementing ProFAST model |
| ProFAST_structure | (Varitional) ICM-EM algorithm for implementing ProFAST model with structurized parameters |
| RunHarmonyLouvain | Embedding alignment and clustering based on the embeddings from ProFAST |
| RuniSCMEB | Fit an iSC-MEB model using the embeddings from ProFAST |
| SelectHKgenes | Select housekeeping genes |
| transferGeneNames | Transfer gene names from one fortmat to the other format |