| analyzeGOSeurat | standard seurat analysis on GO_seurat object |
| cellTypeGOCorr | calculate correlation between cell types represented by scaled GO, per-species |
| crossSpeciesCellTypeGOCorr | calculate cross-species correlation between cell types represented by scaled GO |
| dme_subset | Drosophila gut scRNA-seq data, 10X Chromium Subset to 45 cells per cell type as an example data |
| dme_tbl | Drosophila EMSEMBL gene and GO annotation, subset to genes present in 'dme_subset' |
| ensemblToGo | get requested ensembl ID to GO mapping table |
| getCellTypeGO | get per cell type average scaled vector of GO terms |
| getCellTypeSharedGO | get shared up and down regulated GO terms for all pairs of cell types |
| getCellTypeSharedTerms | query co-up and co-down regulated GO terms from certain cell type pairs |
| globalvariables | record some global variables: pre-defined column name in biomaRt query and markers |
| makeGOSeurat | create a seurat object with GO terms |
| mmu_subset | Mouse stomach and intestine scRNA-seq data, microwell-seq Subset to 50 cells per cell type as an example data |
| mmu_tbl | Mouse EMSEMBL gene and GO annotation, subset to genes present in 'mmu_subset' |
| plotCellTypeCorrHeatmap | plot clustered heatmap for cell type corr |
| plotCellTypeSankey | plot Sankey diagram for cell type links above a certain threshould |