Package: PlasmaMutationDetector
Type: Package
Title: Tumor Mutation Detection in Plasma
Version: 1.7.2
Date: 2018-05-16
Author: Yves Rozenholc, Nicolas Pécuchet, Pierre Laurent-Puig
Maintainer: Yves Rozenholc <yves.rozenholc@parisdescartes.fr>
Description: Aims at detecting single nucleotide variation
    (SNV) and insertion/deletion (INDEL) in circulating tumor DNA (ctDNA), used
    as a surrogate marker for tumor, at each base position of an Next Generation
    Sequencing (NGS) analysis. Mutations are assessed by comparing the minor-allele
    frequency at each position to the measured PER in control samples.
License: MIT + file LICENSE
Imports: S4Vectors (>= 0.16.0), Rsamtools (>= 1.30.0), rtracklayer (>=
        1.38.0), robustbase (>= 0.92-8), SummarizedExperiment (>=
        1.8.0)
Depends: R (>= 3.4.0), ggplot2 (>= 2.2.0), grid (>= 3.4.0),
        GenomicRanges (>= 1.30.0), VariantAnnotation (>= 1.24.0)
Encoding: UTF-8
RoxygenNote: 6.0.1
LazyData: true
NeedsCompilation: no
Packaged: 2018-06-11 02:11:42 UTC; rozen
Repository: CRAN
Date/Publication: 2018-06-11 07:43:09 UTC
Built: R 4.7.0; ; 2026-08-18 02:46:46 UTC; windows
