ImmunData               ImmunData: A data structure for storing
                        adaptive immune receptor repertoire data
agg_receptors           Group AIRR sequence rows into receptors
agg_repertoires         Define biological repertoires and calculate
                        receptor abundance
agg_strata              Group repertoires into biological strata
annotate_anndata        Annotate an AnnData object from ImmunData (by
                        barcode)
annotate_immundata      Add external information to ImmunData
annotate_seurat         Annotate a Seurat object from ImmunData (by
                        barcode)
collect.ImmunData       Collect ImmunData annotations
compute.ImmunData       Compute ImmunData annotations
count.ImmunData         Count chain rows in ImmunData
dimnames.ImmunData      Get Annotation Dimnames from ImmunData
dimnames<-.ImmunData    Prevent Renaming ImmunData via dimnames
downsample_immundata    Reduce repertoires to a common sampling depth
filter_immundata        Keep selected rows or receptors in ImmunData
from_immunarch          Convert an immunarch Object into an ImmunData
                        Dataset
imd_rename_cols         Get input-column presets
imd_schema              Get a standard ImmunData column name
make_default_preprocessing
                        Process chain rows while reading repertoire
                        files
make_receptor_schema    Define which chain observations form the same
                        receptor
make_seq_options        Create options for comparing receptor sequences
mutate_immundata        Add or change annotation columns in ImmunData
names<-.ImmunData       Prevent Renaming ImmunData via names
print.ImmunData         Display the contents and biological definitions
                        of ImmunData
read_immundata          Load an ImmunData object from disk
read_manifest           Load and Validate a Manifest for Immune
                        Repertoire Files
read_repertoires        Read immune repertoire files into ImmunData
rename_strata           Give biological strata readable labels
write_immundata         Save an ImmunData object to disk
