d5e6c69778822b003cf85bdecd2b16bb *DESCRIPTION
9db1496d900c4c1298d4bb987c11fc91 *NAMESPACE
39e240e3b9aa5494a0c960b66a9b4af9 *NEWS.md
1dd915d1225ebe64c37e0ce48e9371ac *R/BasicRun.R
7c2f105c25f26a005767ca063a22e20e *R/CaseControl_Regression.R
b4240c100fb7d1e1b10594936417d206 *R/Cox_Regression.R
a1fd4e3d87cfa2f2d3def82b2529bc01 *R/LogitRegression.R
4675d7da0396387bc702c5ca7b4d4f7f *R/ObjValidate.R
2ec3d0aff9b043a560438d981123e572 *R/PlotTypes.R
a7f4b331a456c52cd7e17a73cfd8f732 *R/Poisson_Regression.R
bab4c9ec573bf53165855e2c2c898c66 *R/RcppExports.R
f7d643a4b4e8be18f197399241fd3519 *R/SurvTypes.R
edb58cb4b9e49e1e6d044d3ea13894fb *R/Utility.R
74146fca873699e7365f62bfafb2c624 *R/utils-roxygen.R
a9e7600478626ae03afd779acb8adaa3 *R/zzz.R
a4664f97948ddbdf5e176ccfcde87736 *README.md
d30eff5578d35d59d2652be27b77b487 *build/vignette.rds
38ba0348cef0ac8408c22acb51d50d83 *cleanup
64726fb8cb6e37288c195da116ec2ec3 *cleanup.win
3d9610c446e77cfc847bcbe9e642d597 *configure
4b79944be94f6e58ee244ccca0939a50 *inst/CITATION
13cf8cbc689b272966ef4840976a2d22 *inst/WORDLIST
729d18c25cb2124339784fce56408315 *inst/doc/Alt_Run_Opt.R
20d3f692ae738993167d1c6f96411c48 *inst/doc/Alt_Run_Opt.Rmd
16f87748d24035daef25fdfdafd8fdc8 *inst/doc/Alt_Run_Opt.html
5e270ae6034b339c2a13d20a5f7d2dec *inst/doc/Control_Options.R
fa8fb08ad6ee5af6857fcf8c744155c3 *inst/doc/Control_Options.Rmd
fd8ec3506cc7e1354d2fbd9c93b43781 *inst/doc/Control_Options.html
c4a842cbf2ace0e2d8ceb41d0b6e1b7a *inst/doc/Dose_Formula_Inputs.R
aff77daab3260b83fc5ea43a93921b14 *inst/doc/Dose_Formula_Inputs.Rmd
275e6a61fe6106674e8f95bc41b9fd20 *inst/doc/Dose_Formula_Inputs.html
8dd1de93ca5adc4046c64953a8c12202 *inst/doc/Equation_Expression.R
80fb645eb5fd39a8f98886f20443aeb9 *inst/doc/Equation_Expression.Rmd
36256af2d86947b078f2419b82fdf276 *inst/doc/Equation_Expression.html
5bb29da465f0fbdd04090460f4eb6715 *inst/doc/Excess_and_Predicted_Cases.R
1af55fbcadfff436f60ac66468f20936 *inst/doc/Excess_and_Predicted_Cases.Rmd
55717a4990088cddbf82104c88d80220 *inst/doc/Excess_and_Predicted_Cases.html
d8984017a354126b96c273eac54d6f9e *inst/doc/Grad_Hess.R
7880bc34a49a133748448d122b28e3af *inst/doc/Grad_Hess.Rmd
d2d8a9f2147691a3467fd3d6d505a737 *inst/doc/Grad_Hess.html
af6a2f3b9612fe76e542a73cd9986e27 *inst/doc/Logistic.R
3a4c512c76c9ab1951ee1f591f8e7592 *inst/doc/Logistic.Rmd
1cc20af3dbc8bda4ded1049df3dead21 *inst/doc/Logistic.html
9b0cbf13efdb783c6e0410acf193801c *inst/doc/Matched_Case_Control.R
12aa1dbae4bf3207d5f16a7360de10ed *inst/doc/Matched_Case_Control.Rmd
1855b7cfc6cf7696da22232f7e56fe7c *inst/doc/Matched_Case_Control.html
293da5b44ffcc9143672377a9e386299 *inst/doc/Multi_Realization.R
000c302afa72206bd66c57cdae4f2595 *inst/doc/Multi_Realization.Rmd
052d48e9aa9b101ac2c01190e21ac2a8 *inst/doc/Multi_Realization.html
85856202c2139119bbdde3e5064b0905 *inst/doc/Plotting_And_Analysis.R
2840ab783bb1f0e81f79ad982c50f32b *inst/doc/Plotting_And_Analysis.Rmd
18355ba6f67ee112ae1c173c44d7a028 *inst/doc/Plotting_And_Analysis.html
b5a45265c7ef5c51abada998f077e885 *inst/doc/SMR_Analysis.R
4a461da0a4870aacc6d64f93130fce61 *inst/doc/SMR_Analysis.Rmd
457a08f571c7999ed3ee69479e3a0364 *inst/doc/SMR_Analysis.html
e43d2bc2cb8e2e2d8253f1cc3899d286 *inst/doc/Script_Comparison_Epicure.R
6a6c06a89e511f0e6edc8e85ec3fbfb9 *inst/doc/Script_Comparison_Epicure.Rmd
2833a18996e5269ec50dd2b8463d459b *inst/doc/Script_Comparison_Epicure.html
671f41cbce3bd67b610b89666d863247 *inst/doc/Starting-Description.R
51e3c04862d24ebe70f8370e237ea0ea *inst/doc/Starting-Description.Rmd
76844b978902cc42ac30125bc771544e *inst/doc/Starting-Description.html
62f3eaf0812d62177d85749153df9840 *inst/doc/Time_Dep_Cov.R
4ba78997f2af45adbbf80fb92974f42b *inst/doc/Time_Dep_Cov.Rmd
3de3989cc9681b0e8ff8885b75d5be4d *inst/doc/Time_Dep_Cov.html
6bf6aca0463db116ff7cd28abc31d292 *inst/doc/Wald_and_Log_Bound.R
9d8cae14512fc655e5551c0fa2c3590b *inst/doc/Wald_and_Log_Bound.Rmd
0bdfaa7101f6180bc7831644da95b22b *inst/doc/Wald_and_Log_Bound.html
bf1d1a10d32ab16c515a61e3d560a5d7 *inst/doc/count_time_tables.R
2b3c2b4114eca2e1e707f5ee0583b151 *inst/doc/count_time_tables.Rmd
508efbdfcf7665026a0fdc8ca7dffc3e *inst/doc/count_time_tables.html
cd6aece2a31218815a0a447decfe68df *man/CaseControlRun.Rd
8c0b8d41e842dffe2f50630ebacf25b2 *man/ColossusCoxSurv.Rd
669f69f9300283848afb10d39e01f4e9 *man/ColossusLogitSurv.Rd
613e10eaf7ca99ce91f226226c24410d *man/ColossusPoisSurv.Rd
de8fea95a4a743ced446207fd93ff9b9 *man/CoxRun.Rd
ff52a0f458044cf0a009a5b855fa3f91 *man/CoxRunMulti.Rd
3d195cd515520b307c96ef17abc43888 *man/Date_Shift.Rd
daef2a2ff20fc44a0b5538dce3ffc342 *man/EventAssignment.Rd
4538a18912a094850d0d04d64f52ed5c *man/EventAssignment.default.Rd
7b958b6c57aac1714e3e35203016d9c2 *man/EventAssignment.poisres.Rd
119c08bec767c8b781243b62f4aef827 *man/EventAssignment.poisresbound.Rd
f8fe4aded5f93bc12f540f38b84d4b74 *man/Event_Count_Gen.Rd
f6c745e538fb7667fe1d290b9bcc4a54 *man/Event_Time_Gen.Rd
30cdc671c9d8629de62d478f0efb9a52 *man/Joint_Multiple_Events.Rd
bf6a245ae1060fcc34f772b980a94943 *man/LikelihoodBound.Rd
b902ad25a8ca873479d596f16ec3f8d7 *man/LikelihoodBound.coxres.Rd
171e7ffb802cf2c2d209816d6aebdd15 *man/LikelihoodBound.default.Rd
c4b77bebeca3446ea7537cf0112d4b5c *man/LikelihoodBound.poisres.Rd
93aec8d78029bff494cf4646c8ea78b7 *man/Likelihood_Ratio_Test.Rd
b188b9f818b7e5d8b169f07679b4f972 *man/Linked_Dose_Formula.Rd
f5ad28450c0deba3db2a2ee48fc94293 *man/Linked_Lin_Exp_Para.Rd
f815f95c74c7d0c7f545f58a46d8d91e *man/LogisticRun.Rd
9d562534061a4ba2b9f2e7ab7cce387a *man/OMP_Check.Rd
73df0a5a07cc65bfceebb0c2a0becf79 *man/PoisRun.Rd
c0c306bb182ce0b19879faa00c54f3f1 *man/PoisRunJoint.Rd
ba53c6a85830e7d23b90b9a05789cba5 *man/PoisRunMulti.Rd
b2b2016c01f3cf2d0f56d09b06a4685a *man/RelativeRisk.Rd
62201cd9aa0a5c094f41ac5dd32b16de *man/RelativeRisk.coxres.Rd
34fd8099d53544b2d2ccf8d01c756512 *man/RelativeRisk.default.Rd
f39c62122736541b71289cf2aa008e11 *man/Replace_Missing.Rd
40ea07a72eaed169ad7bdeffabdb425d *man/Residual.Rd
466a1f8803c5708066ef426deb2cabcb *man/Residual.default.Rd
b3d102359f9c0e6acadaf42bf374b215 *man/Residual.poisres.Rd
4b0c72a46309f4a3ec2d5c50ed7f87f3 *man/System_Version.Rd
aeedf3b1ae6cd593fb53a351ce3c7797 *man/Time_Since.Rd
89df1311f0b8cff4f85a05cb8f5b0519 *man/factorize.Rd
41fe5079fb8fa21cf48f2c5110a98003 *man/gen_time_dep.Rd
9fe52694c884ad346d53ea7872548fa6 *man/get_form.Rd
d4262030f4d95ed1ef7adbe7d94909c2 *man/get_form_joint.Rd
b5df6ae0dc4d18f792462f64db0afc86 *man/plot.coxres.Rd
a1d2d7dc1800366a2327a9d6b8349348 *man/print.caseconres.Rd
58e089fd82f6615d85a7fe873c394d5a *man/print.coxres.Rd
8e065e68ff542e80feca2a4f8eaf55ad *man/print.coxresbound.Rd
72088acd65cbefe29e7d83a8a8b62c3c *man/print.logitres.Rd
e8489c166d27399908ff924fbd07ee21 *man/print.poisres.Rd
5b46c6014f74c60a7ee8742fcd2c52f6 *man/print.poisresbound.Rd
a286a4b5ce1274cae77d37169eaea9b7 *src/Calc_Repeated.cpp
951ed47bab9f4b9c7dcd2c0cf862f84e *src/Calc_Repeated.h
ae9af2fa93b202fde4759437ff2e5786 *src/Colossus_types.h
3a2ea99cec0515f505740e91ddd37271 *src/Main_Bound.cpp
c2c6429d024f35b30369ebf21c671cad *src/Main_Bound.h
982d0defd6ed4bae01b5b134733a2d66 *src/Main_Functions.cpp
02a0054a46ef049b908c128952815a27 *src/Main_Functions.h
9f7eb76d4cd8e7312a875275ca9d5ef9 *src/Main_Multi.cpp
2b42808189a6072bc2d5a0329afa8ad5 *src/Main_Multi.h
fee02fbe88c04c99eb902a6c88534c3c *src/Makevars.in
2160fcff054e7f622f40f10f4c1b9ac4 *src/Makevars.win
0fd344970d6b773a0014b700b7b7efbe *src/Omnibus_Pieces.cpp
a01cb6064dba7047439db0de4e30643b *src/Omnibus_Pieces.h
5f13a9f8fc8953465e68806f31f6f25b *src/Plot_Extensions.cpp
93d797a938e2dd22abd4dabde084c020 *src/Plot_Extensions.h
248e31566b99b85ebbbce6258a139b82 *src/R_Interface.cpp
400a3073cb49694db1377b5f67abd824 *src/R_Interface.h
f2c1b264f352b74ff9625d670b971932 *src/RcppExports.cpp
c2d6e1f160a325979a6058f998c36eb6 *src/Step_Calc.cpp
bd2bf518b0f7c205552305a83a2c9147 *src/Step_Calc.h
055d533a37396b24d91a35e3ee1d6e44 *src/Step_Grad.cpp
30161a71e75ffe308f95d232b2eb50cd *src/Step_Grad.h
efc18993af1cc353f8478e08e4d619e8 *src/Step_Newton.cpp
d323edba96dbc38dbe8dd2aa750f7a7f *src/Step_Newton.h
10e8a72114c349950057887d5edc2392 *src/Subterms_Risk.cpp
0858bc24f321187c0dadb532f3c64bf0 *src/Subterms_Risk.h
50f330eeca8db092d6807e04457bd06d *tests/spelling.R
0350350391ab30b3e0a0ec3353cc8b7c *tests/testthat.R
25c6bb41e6ad82db306a1f06bad00847 *tests/testthat/Assigned_Check.csv
60e01a966792bc8d7f6e27124dc8f029 *tests/testthat/MULTI_COV.csv
96831dc35f40c757538a7ac7a97536dd *tests/testthat/base_example.csv
44efefec3c4c2c8c075996d5b82a8960 *tests/testthat/dose.csv
c2d2fe68f1664d6b7c6fd77cd2de9916 *tests/testthat/l_pl_0.csv
e34d071e947b48c8c0328aaf56928956 *tests/testthat/l_pl_A_0.csv
ff21327faf666f2def06035a8592e761 *tests/testthat/ll_0.csv
fc69bff3eb2f66b8cedcf86a832666c9 *tests/testthat/ll_cens_0.csv
f8a0597d561e296f39774a158f310277 *tests/testthat/ll_comp_0.csv
750e11faea7d643b0017356558841531 *tests/testthat/sholom.csv
de6aa6ca0ff399356c2b85f5ac577402 *tests/testthat/test-Assigned.R
e6ad1a5f877fe44a62ebdcc0f07b3136 *tests/testthat/test-CaseControl.R
6b55ea94cc03e0e3e84a1c0e945af384 *tests/testthat/test-Cox_Plot.R
184e530763d4f518cad8d22cd2186313 *tests/testthat/test-Cox_Regression.R
d52feba4a128341ad4b870025b3d4393 *tests/testthat/test-Formula.R
8ba3033996ab816798c136031c85ad2c *tests/testthat/test-Gradient.R
efac292301de4e670ed369cf773f1a17 *tests/testthat/test-Joint.R
c5df4b38a14e302b47998965c2cd912d *tests/testthat/test-Logbound.R
079d6048b843cf765c168ce2da68a0eb *tests/testthat/test-Logit.R
cfdc7541ed384b2c7a67bd124c894498 *tests/testthat/test-Multidose.R
8f2f59a00ccc2a151fe58fd533e87439 *tests/testthat/test-Norm.R
d75352af4e725082dbe97659daee6caf *tests/testthat/test-Omnibus.R
16b24e2e0473be241fcf61b74b835de4 *tests/testthat/test-Poisson_Regression.R
7d9f3e02f6de411bd411a94350a21436 *tests/testthat/test-Poisson_Residual.R
03f5355addd3a7ec44795f2f611d2f1b *tests/testthat/test-Table.R
2823d29b197d6dddcc1a538b96ab2a84 *tests/testthat/test-Utility.R
8b6b0a0e61f4d2cfbafcff6d1ef6d559 *tools/config.R
38ac37bc72560d175fd527894cf53735 *tools/config/cleanup.R
5454d6054979af30235a15f200c25f4f *tools/config/configure.R
20d3f692ae738993167d1c6f96411c48 *vignettes/Alt_Run_Opt.Rmd
fa8fb08ad6ee5af6857fcf8c744155c3 *vignettes/Control_Options.Rmd
aff77daab3260b83fc5ea43a93921b14 *vignettes/Dose_Formula_Inputs.Rmd
80fb645eb5fd39a8f98886f20443aeb9 *vignettes/Equation_Expression.Rmd
1af55fbcadfff436f60ac66468f20936 *vignettes/Excess_and_Predicted_Cases.Rmd
7880bc34a49a133748448d122b28e3af *vignettes/Grad_Hess.Rmd
3a4c512c76c9ab1951ee1f591f8e7592 *vignettes/Logistic.Rmd
12aa1dbae4bf3207d5f16a7360de10ed *vignettes/Matched_Case_Control.Rmd
000c302afa72206bd66c57cdae4f2595 *vignettes/Multi_Realization.Rmd
2840ab783bb1f0e81f79ad982c50f32b *vignettes/Plotting_And_Analysis.Rmd
4a461da0a4870aacc6d64f93130fce61 *vignettes/SMR_Analysis.Rmd
6a6c06a89e511f0e6edc8e85ec3fbfb9 *vignettes/Script_Comparison_Epicure.Rmd
51e3c04862d24ebe70f8370e237ea0ea *vignettes/Starting-Description.Rmd
4ba78997f2af45adbbf80fb92974f42b *vignettes/Time_Dep_Cov.Rmd
9d8cae14512fc655e5551c0fa2c3590b *vignettes/Wald_and_Log_Bound.Rmd
2b3c2b4114eca2e1e707f5ee0583b151 *vignettes/count_time_tables.Rmd
2aa53a05d43836fa9155d9c80531c4b1 *vignettes/mystyle.css
