# Generated by roxygen2: do not edit by hand

S3method(base::`dimnames<-`,ImmunData)
S3method(base::`names<-`,ImmunData)
S3method(dimnames,ImmunData)
S3method(dplyr::collect,ImmunData)
S3method(dplyr::compute,ImmunData)
S3method(dplyr::count,ImmunData)
S3method(dplyr::filter,ImmunData)
S3method(dplyr::mutate,ImmunData)
S3method(print,ImmunData)
export(ImmunData)
export(agg_receptors)
export(agg_repertoires)
export(agg_strata)
export(annotate)
export(annotate_anndata)
export(annotate_barcodes)
export(annotate_chains)
export(annotate_immundata)
export(annotate_receptors)
export(annotate_seurat)
export(assert_receptor_schema)
export(downsample_immundata)
export(filter_barcodes)
export(filter_immundata)
export(filter_receptors)
export(from_immunarch)
export(get_test_idata)
export(imd_drop_cols)
export(imd_files)
export(imd_meta_schema)
export(imd_receptor_chains)
export(imd_receptor_features)
export(imd_rename_cols)
export(imd_repertoire_schema)
export(imd_schema)
export(imd_schema_sym)
export(make_barcode_prefix)
export(make_default_postprocessing)
export(make_default_preprocessing)
export(make_exclude_columns)
export(make_productive_filter)
export(make_receptor_schema)
export(make_seq_options)
export(mutate_immundata)
export(read_immundata)
export(read_manifest)
export(read_repertoires)
export(rename_strata)
export(test_receptor_schema)
export(write_immundata)
importFrom(R6,R6Class)
importFrom(checkmate,
  assert,
  assertCharacter,
  assertR6,
  assert_character,
  assert_choice,
  assert_class,
  assert_data_frame,
  assert_directory_exists,
  assert_file_exists,
  assert_logical,
  assert_string,
  checkCharacter,
  checkChoice,
  checkR6,
  check_character,
  check_choice,
  check_class,
  check_data_frame,
  check_function,
  check_list,
  check_scalar_na,
  check_subset,
  check_true,
  makeAssertion,
  test_character,
  test_data_frame,
  test_file_exists,
  test_function,
  test_list,
  test_subset
)
importFrom(cli,
  cli_abort,
  cli_alert_danger,
  cli_alert_info,
  cli_alert_success,
  cli_alert_warning,
  cli_end,
  cli_li,
  cli_ol,
  cli_ul
)
importFrom(dplyr,
  all_of,
  any_of,
  arrange,
  collect,
  compute,
  count,
  distinct,
  filter,
  full_join,
  inner_join,
  left_join,
  mutate,
  n,
  pull,
  relocate,
  rename,
  right_join,
  row_number,
  select,
  semi_join,
  summarise,
  union_all
)
importFrom(duckplyr,
  as_duckdb_tibble,
  as_tbl,
  compute_parquet,
  duckdb_tibble,
  read_csv_duckdb,
  read_parquet_duckdb
)
importFrom(glue,glue)
importFrom(jsonlite,unbox)
importFrom(lifecycle,deprecated)
importFrom(readr,read_delim)
importFrom(rlang,
  ":=",
  .data,
  sym,
  syms
)
importFrom(tibble,as_tibble)
importFrom(tools,file_ext)
importFrom(utils,
  packageDescription,
  packageVersion,
  tail
)
