dcb649b24440c0e454bbc93ff372fcc6 *DESCRIPTION
b3c1f442aea310a7e80aa54399b239f9 *NAMESPACE
e7ab7b47b35eb90a91d97cfef9b4a1a3 *R/CMSTCross.R
e63b5152f5639ab5bc6833a55db7f69a *R/CMSTtests.R
fada1c3c8b9cf4bbbb12edebaae56534 *R/CMSTtestsList.R
7d4147845750821111d255bed6616c46 *R/CreateTraitsLodInt.R
bf12ef32f5bea9392e17f8eaaa857390 *R/FitAllTests.R
dc40c689df893c667a5e3d254872e586 *R/GetCandReg.R
2834d470eec1a327856e9c977f0cbfcc *R/GetCisCandReg.R
1dc7631f40feb83482bad2aa50557c37 *R/GetCommonQtls.R
4906b84d84f79e62b1ffdb10e425c445 *R/MySimulations.R
198de0b9d81d5b07c408b0f06d6d99c9 *R/PerformanceSummariesKo.R
0a92d6afc6d91e1dd6e686f24ac17253 *R/PrecTpFpMatrix.R
5bdf4a2ca466289db063a360244fe1d2 *R/SimCrossCausal.R
9ff4a5d6a17d1510bb031b356bbeec18 *R/add.phenos.R
2fad3083562029cbfc1115ea4efb1915 *R/big.R
c0a228c39a735b146425bb40c1e5bec2 *R/counts.R
5e6d4fa17402d702d0afa4cd041feda3 *R/highlod.R
fe971e4479caab3f9e3c63d56f3f0330 *R/hotperm.R
28b8ed0fcd76cc1afd8d4b348515e3c9 *R/hotperm1.R
9c7ef64910be1d27c53b30ce0b75e9e7 *R/hotsize.R
e7f31fc253e4254a2312f074ade1647b *R/include.hotspots.R
a9cfb95dfb2095e804aa9f2af1e11417 *R/max.R
1c9cd3b60ec1149352613acfac745a0e *R/multiple_testing_sim_functions.R
c60a579e638cda6a1d58fa59989664af *R/neqtl.R
dcef7aeaa04c7057b875b2779750660c *R/p.adjust.np.R
40c901146d8479414a3f804666b8774d *R/parallel.R
8c766b1d20fd325e067da206ea27cb32 *R/plotcmst.R
43e15b98d5a239a39ff51bad8eeea7b3 *R/ravel.R
caa27fc5b3a369254761fa583adb8588 *R/roc.R
76287a958e5977b44ab37f9f96aed0a7 *R/rug.R
b5c916faab2feb36ca43f5dee4922563 *R/sim.hotspot.R
26a6d466267ecae6cbfa036efe2a3f9d *R/sim.null.cross.R
342f15514631f5c14658de9cc919b35c *R/sliding.R
191e461b2dd1902672c3ba4eebdfa44e *R/study.R
0a0d3b612706ede8c7094f3dff86ff14 *R/utilcmst.R
f4e31ccf1e2c3533d3b362283dfa3a66 *R/utilhot.R
dfe4598b93bac4b0f2a002aa2ab76860 *R/ww.perm.R
57abfe7cf0041d70accb19f8bbe7ef7c *README.md
3ab3dca0210d13c90bc9309ad33daaf3 *build/vignette.rds
ce8e0880fc38da5885a6d3fb58b0dc8c *data/CMSTCross.RData
3e1da9c944a86de2d916c2afffe3ccfe *data/hotperm1.RData
89bff8163dbfdb0b2e5fe28276ecd4fa *inst/deprecated.R
4c17b531b2f692edb592f7ac5ffb5193 *inst/doc/cmst.R
74334e242df482ec63f0a3b238c4a6c2 *inst/doc/cmst.Rmd
4d289858632672be969c885cdc4c2736 *inst/doc/cmst.pdf
782a5e3de9d9d0fbb77e1860fae9d2dd *inst/doc/qtlhot.R
7974b2444d91281e13b5feb750e3bfa7 *inst/doc/qtlhot.Rmd
8153987b8e6d80e4b8ad6e1832f2d0f2 *inst/doc/qtlhot.pdf
11704113157929b53b0e2c5ba015ad3e *inst/notes/cmst.txt
52d8cbf0da7b5bdc67b82665b7e8c4c1 *inst/notes/code.txt
c15b74d7121a2ddbe21306b65ccd3b64 *inst/notes/perm.txt
6d4c95af46a1a4bcc321d888beccd874 *inst/notes/plot.R
1f353aa7e5840f8c82884698969b6b28 *inst/notes/vignette.txt
4f5aed9c48c35420d2fcf792196707d4 *inst/parallel/Phase0.R
8178038dca48891725c7d1386beb4b11 *inst/parallel/Phase1.R
5b4f049ad59aae7ee7efd58ae028a269 *inst/parallel/Phase2.R
817f9a45083324b22e3ca1fc93eba97e *inst/parallel/Phase3.R
2558f59c4c19ef51de1b21a4cf6f8d51 *inst/parallel/ReadMe
c031e3c89986ff8dbe7ac049bb582c90 *inst/parallel/SOAR.phase0.R
a5c3774fa0c5b298161fd419ec5bcb50 *inst/parallel/SOAR.post.R
0eac83f946b60f56fe187ddcd4a7760f *inst/parallel/cross.RData
8b9712f8ce05f9005356e0b06798357c *inst/parallel/params.txt
be0c94b6582c2f5f503730bb94833b21 *inst/parallel/runparallel.sh
d999c85426208f68b5549410d5043937 *man/CMSTCross.Rd
f18348e94d438ae66229f5176098f2a7 *man/CMSTtests.Rd
1237912cab6cd68110a95e74b0f78352 *man/FitAllTests.Rd
4b4d583804ccafdd2d942827b8e5ae2f *man/GetCandReg.Rd
9ec738c8f62fe6323fbe21d3b033ec37 *man/GetCommonQtls.Rd
86e1814f16e8ec8fe3a486a3815a797a *man/PrecTpFpMatrix.Rd
a42fffc3635cb4ffdce91cc2be3c052e *man/SimCrossCausal.Rd
b26479cc5592cbe7d171e326a34d5b78 *man/add.phenos.Rd
9a6c9fe930cdda2514a4b9f1a2887673 *man/filter.threshold.Rd
e39da47839fd58c3b19bf08b499a4264 *man/highlod.Rd
5c677807089639392712f145245d44cb *man/hotperm.Rd
b1ee8856debad2818719a210ab7a9d1b *man/hotperm1.Rd
16e360ac12f10bfcad1a70a8085bfe22 *man/hotsize.Rd
7442de784f3adc0a1a051df9248cfe29 *man/include.hotspots.Rd
d314f54274d1576eb76b23995ee28644 *man/neqtl.Rd
15705453721d9a4b2201ef5803ff6fd6 *man/parallel.qtlhot.Rd
3930d48a31ce6b8a067a6fb570cc67cb *man/quantile_highlod.Rd
a3aed1025446f49ed3052e6e1efdf38b *man/quantile_hotperm.Rd
b823a4b240b095058e5943e937830f4a *man/sim.hotspot.Rd
d2771399207a97c8826e4a1fb30ba192 *man/sim.null.cross.Rd
ba4bfc7cc333e47d6c4f8ac62de76952 *man/ww.perm.Rd
74334e242df482ec63f0a3b238c4a6c2 *vignettes/cmst.Rmd
754110ddc8a32ef50c6eab8aca8fb5f1 *vignettes/cmst.html
7974b2444d91281e13b5feb750e3bfa7 *vignettes/qtlhot.Rmd
9d6151171384bb8f78a08705a7af6054 *vignettes/qtlhot.html
eadb46c9eff99c3a182c8c7086032f1e *vignettes/savedperms.RData
