musclesyneRgies 1.2.5

How to install

install.packages("remotes")
remotes::install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Removed dependency from gtools
Removed JOSS paper folder.

musclesyneRgies 1.2.4

How to install

install.packages("remotes")
remotes::install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Increased robustness of subsetEMG
Added tests for subsetEMG
Updated CITATION files
synsNMF now saves the synergy-vs-quality data.

musclesyneRgies 1.2.3

How to install

install.packages("remotes")
remotes::install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Removed ISBNs from JOSS paper bibliography.

musclesyneRgies 1.2.2

How to install

install.packages("remotes")
remotes::install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Corrected JOSS paper bibliography.

musclesyneRgies 1.2.1

How to install

install.packages("remotes")
remotes::install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Version ready for JOSS paper after spell check.

musclesyneRgies 1.2.0

How to install

install.packages("remotes")
remotes::install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Version ready for JOSS paper.

musclesyneRgies 1.1.3.9006 (development version)

How to install

install.packages("remotes")
remotes::install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Cleaned and adjusted code according to goodpractice::gp() suggestions (thanks @fabian_s for the hint!)
Added more tests for classify_kmeans, synsNMF, subsetEMG, sMLE, normEMG, Hurst, HFD, filtEMG, plot_classified_syns_UMAP, plot_meanEMG, plot_rawEMG.

musclesyneRgies 1.1.3.9005 (development version)

How to install

install.packages("remotes")
remotes::install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Added to README the possibility to download a full data set from Zenodo
Added definition of muscle synergies to README
Added definition of motor modules and motor primitives to README
Improved documentation of classify_kmeans, HFD and Hurst
Added test for classify_kmeans.

musclesyneRgies 1.1.3.9004 (development version)

How to install

install.packages("remotes")
remotes::install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Updated tests to check for compatibility with single-column cycles.

musclesyneRgies 1.1.3.9003 (development version)

How to install

install.packages("devtools")
devtools::install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Improved robustness of EMG pre-processing functions for one-column cycle times.

musclesyneRgies 1.1.3.9002 (development version)

How to install

install.packages("devtools")
library(devtools)
install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Removed emg data frame row names in RAW_DATA list
Updated JOSS paper draft
rawdata can now handle RData files saved with save().

musclesyneRgies 1.1.3.9001 (development version)

How to install

install.packages("devtools")
library(devtools)
install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Added Open Journals PDF Generator GitHub Action
First JOSS paper draft.

musclesyneRgies 1.1.3.9000 (development version)

How to install

install.packages("devtools")
library(devtools)
install_github("alesantuz/musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Improved robustness of normEMG function.

musclesyneRgies 1.1.3

How to install

install.packages("musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Faster examples and tests for CRAN
Removed classify_NMF function.

musclesyneRgies 1.1.2

How to install

install.packages("musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

Removed all progress bars.

musclesyneRgies 1.1.1

How to install

install.packages("musclesyneRgies")

How to use

README and vignettes are available both on CRAN and on GitHub.

What’s changed

musclesyneRgies is on CRAN!
Adjusted test-CoA.R to pass on M1mac and noLD.

musclesyneRgies 1.1.0

How to install

install.packages("devtools")
library(devtools)
install_github("alesantuz/musclesyneRgies")

How to use

Follow the README for a breakdown of the typical workflow.

What’s changed

This version was submitted to CRAN for checks
Added tests
Added NEWS.md to track changes to the package
Function plot_rawEMG can now plot muscle activities in custom grid (arguments row_number and col_number)
Line thickness and colour can now be specified in function plot_rawEMG (arguments line_size and line_col)
Added dark mode to plot_rawEMG, plot_meanEMG, plot_syn_trials and plot_classified_syns
Function plot_syn_trials partially rewritten with new native pipes |> and lapply instead of for loops
Updated README
Added CITATION.cff using R package cffr
Simplified all plot functions, which now exports gtable objects rather tan saving to file
Added tests for plot functions
Added vignettes (workflow, plots, analysis and pro_tips).

musclesyneRgies 1.0.1

How to install

install.packages("devtools")
library(devtools)
install_github("alesantuz/musclesyneRgies")

How to use

Follow the README for a breakdown of the typical workflow.

What’s changed

Rectification can now be avoided in filtEMG if needed with rectif = "none"
Functions plot_rawEMG and plot_meanEMG partially rewritten with new native pipes |> and lapply instead of for loops
Fixed a bug in synsNMF that didn’t L2-normalise M and P in iteration “zero”.

musclesyneRgies 1.0.0

How to install

install.packages("devtools")
library(devtools)
install_github("alesantuz/musclesyneRgies")

What’s changed

The short-term maximum Lyapunov exponents of motor primitives can now be calculated with the new function sMLE
Zero- or negative values in relevant matrices are now replaced with the smallest non-zero around twice as fast
L2-normalisation within synsNMF is now 1.5-2x faster
All code re-styled in tidyverse style using styler
Fixed a bug in filtEMG that didn’t allow to avoid low-pass filtering if needed.

musclesyneRgies 0.9.4-beta

All code re-styled with tidyverse style using styler, plus new logo!

v1.0.0 coming soon with function for calculating the short-term maximum Lyapunov exponents of motor primitives.

musclesyneRgies 0.9.3-beta

Improved robustness of functions subsetEMG and normEMG when cycle times are given as data frames.

musclesyneRgies 0.9.2-beta

This not-so-minor update allows the user to extract synergies with a fixed rank.

musclesyneRgies 0.9.1-beta

musclesyneRgies is now a R package. Follow the README for a breakdown of the typical workflow. This is the first release, still in beta.

musclesyneRgies 0.8.7-alpha

Fixed a bug in the UMAP plots.

musclesyneRgies 0.8.6-alpha

Housekeeping and UMAP plots of mean filtered EMG.

musclesyneRgies 0.8.5-alpha

UMAP plots of classified synergies are saved in the NMF folder for advanced visualisation of factorisation/classification outcomes.

UMAP details: McInnes, Leland, John Healy, and James Melville. “Umap: Uniform manifold approximation and projection for dimension reduction.” arXiv preprint arXiv:1802.03426 (2018).

R-package: https://cran.r-project.org/web/packages/umap/

musclesyneRgies 0.8.4-alpha

Raw EMG plots are now saved for each trial. The last raw_pl (see line 133) seconds of the trial are considered for plots.

musclesyneRgies 0.8.3-alpha

When reordering synergies manually during classification, the user can now repeat endlessly the classification if mistakes are made during input.

musclesyneRgies 0.8.2-alpha

A bit of housekeeping and now the clusters found by k-means classification are saved in one plot per condition.

musclesyneRgies 0.8.1-alpha

The robustness of k-means classification is improved and can now better deal with special cases of clusters with similar CoA and FWHM.

musclesyneRgies 0.7.3-alpha

Now the classification method is saved in the SYNS_classified list and can be used by step 4 (graph creation) to save the classification method in the file name.

musclesyneRgies 0.7.2-alpha

Now the classification method is saved in the file name when producing graph in step 4.

musclesyneRgies 0.7.1-alpha

First public API of musclesyneRgies
Fixed a bug in section 4